Installation

Installation

The systemPipeShiny package can be installed from a user’s R console as follows.

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("systemPipeShiny")

# or use "pak"
if (!requireNamespace("pak", quietly=TRUE))
    install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
pak::pkg_install("systemPipeShiny")

If the user’s OS is Linux then one may need to install the following dependencies before installing SPS. The following example applies to Ubuntu.

sudo apt-get install -y libcurl4-openssl-dev
sudo apt-get install -y libssl-dev
sudo apt-get install -y libv8-dev
# other dependencies
sudo apt-get install -y libicu-dev
sudo apt-get install -y pandoc
sudo apt-get install -y make
sudo apt-get install -y libglpk-dev
sudo apt-get install -y libgmp3-dev
sudo apt-get install -y zlib1g-dev

Most likely you only need to install first 3, libcurl4-openssl-dev may not be required for Ubuntu > 18.04. In case any other problem happens, try to install other system dependencies.

On other Linux distributions, the install commands may be slightly different.

Last modified 2021-02-08: sps updates no_render (c30b3d0)