systemPipe Workflow Environment

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A workflow design, report generation, and visualization framework for data analysis

systemPipe Project

The systemPipe project provides a suite of R/Bioconductor packages for designing, building and running end-to-end analysis workflows on local machines, HPC clusters and cloud systems, while generating at the same time publication quality analysis reports.


Download a stable release from Bioconductor of

systemPipeR , systemPipeShiny , systemPipeTools , systemPipeRdata.

Contributions welcome!

Get the lastest version, submit issues and pull requests. Read more here.

systemPipeShiny Demo

Try an interactive demo and tutorial.