Conferences

BioC2021

• BioC2021{blk}

• systemPipe: Workflow and Visualization Toolkit - Workshop

  • Workshop Website{blk}
  • Bioc2021 Workshop{blk}
  • GitHub Material{blk}

BioC2020

• BioC2020{blk}

• systemPipeShiny: An Interactive Framework for Workflow Management and Visualization - F1000{blk}

• systemPipeR: a generic workflow environment federates R with command-line software - F1000{blk}

BioC2019

• BioC2019{blk}
• systemPipeR's New CWL Command-line Interface - Workshop
  • GitHub Material{blk}

[ View Slides in Separate Browser Tab ]{blk}

Bioc2018

• BioC2018{blk}

• Poster Bioc2018{blk}

Bioc2016

• BioC2016{blk}

[ View Slides in Separate Browser Tab ]{blk}

Material for Bioc2016 Tutorial

• Intro Slide Show{blk}
• Tutorial Material
  • Introduction to systemPipeR
    • HTML{blk}
    • PDF{blk}
    • Rmd{blk}
  • Demo Workflow: RIBO-Seq
    • HTML{blk}
    • PDF{blk}
    • Rmd{blk}

Installation

Please install systemPipeRdata from this GitHub repository as shown below. This package provides the data and Rmd files for the tutorial. Its parent package systemPipeR is a dependency and it should install along with all its own dependencies automatically. If it doesn’t then please also install the package, using the BiocManager::install command given below.

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("tgirke/systemPipeRdata", build_vignettes=TRUE, dependencies=TRUE)

BioC2015

• BioC2015{blk}

[ View Slides in Separate Browser Tab ]{blk}