SPR WorkFlow Collection
Workflow Templates
systemPipeR
project provides pre-configured workflows and reporting templates for a wide range of NGS applications that are listed bellow. The systemPipeR project provides a suite of R/Bioconductor packages for designing, building and running end-to-end analysis workflows on local machines, HPC clusters
and cloud systems, while generating at the same time publication quality analysis reports.
systemPipeRdata
is a helper package
to generate with a single command workflow templates that are intended to be
used by its parent package systemPipeR
(H Backman and Girke 2016).
Reference