targets.as.df.Rd
Convert targets files to list
or data.frame
object.
targets.as.df(x)
targets.as.list(x, id="SampleName")
An object of the class "list"
or "data.frame"
that stores data
from each target file, as targets(WF)
.
A column from targets
file, which will be used as an id for each one
of the samples. It is required to be unique.
data.frame
or list
containing all the targets
file information.
showClass("SYSargs2")
targetspath <- system.file("extdata", "targets.txt", package="systemPipeR")
targets <- read.delim(targetspath, comment.char = "#")
targetslist <- targets.as.list(x=targets)
targets.as.df(x=targetslist)
#> FileName SampleName Factor SampleLong Experiment
#> 1 ./data/SRR446027_1.fastq.gz M1A M1 Mock.1h.A 1
#> 2 ./data/SRR446028_1.fastq.gz M1B M1 Mock.1h.B 1
#> 3 ./data/SRR446029_1.fastq.gz A1A A1 Avr.1h.A 1
#> 4 ./data/SRR446030_1.fastq.gz A1B A1 Avr.1h.B 1
#> 5 ./data/SRR446031_1.fastq.gz V1A V1 Vir.1h.A 1
#> 6 ./data/SRR446032_1.fastq.gz V1B V1 Vir.1h.B 1
#> 7 ./data/SRR446033_1.fastq.gz M6A M6 Mock.6h.A 1
#> 8 ./data/SRR446034_1.fastq.gz M6B M6 Mock.6h.B 1
#> 9 ./data/SRR446035_1.fastq.gz A6A A6 Avr.6h.A 1
#> 10 ./data/SRR446036_1.fastq.gz A6B A6 Avr.6h.B 1
#> 11 ./data/SRR446037_1.fastq.gz V6A V6 Vir.6h.A 1
#> 12 ./data/SRR446038_1.fastq.gz V6B V6 Vir.6h.B 1
#> 13 ./data/SRR446039_1.fastq.gz M12A M12 Mock.12h.A 1
#> 14 ./data/SRR446040_1.fastq.gz M12B M12 Mock.12h.B 1
#> 15 ./data/SRR446041_1.fastq.gz A12A A12 Avr.12h.A 1
#> 16 ./data/SRR446042_1.fastq.gz A12B A12 Avr.12h.B 1
#> 17 ./data/SRR446043_1.fastq.gz V12A V12 Vir.12h.A 1
#> 18 ./data/SRR446044_1.fastq.gz V12B V12 Vir.12h.B 1
#> Date
#> 1 23-Mar-2012
#> 2 23-Mar-2012
#> 3 23-Mar-2012
#> 4 23-Mar-2012
#> 5 23-Mar-2012
#> 6 23-Mar-2012
#> 7 23-Mar-2012
#> 8 23-Mar-2012
#> 9 23-Mar-2012
#> 10 23-Mar-2012
#> 11 23-Mar-2012
#> 12 23-Mar-2012
#> 13 23-Mar-2012
#> 14 23-Mar-2012
#> 15 23-Mar-2012
#> 16 23-Mar-2012
#> 17 23-Mar-2012
#> 18 23-Mar-2012