Toggles option eval on the RMarkdown files

Function to evaluate (eval=TRUE) or not evaluate (eval=FALSE) R chunk codes in the Rmarkdown file. This function does not run the code, just toggles between TRUE or FALSE the option eval and writes out a new file with the chosen option.

evalCode(infile, eval = TRUE, output)

Arguments

infile

name and path of the infile file, format Rmd.

eval

whether to evaluate the code and include its results. The default is TRUE.

output

name and path of the output file. File format Rmd.

Value

Writes Rmarkdown file containing the exact copy of the infile file with the option choose on the eval argument. It will be easy to toggle between run all the R chunk codes or not.

Author

Daniela Cassol

Examples

library(systemPipeRdata)
file <- system.file("extdata/workflows/rnaseq", "systemPipeRNAseq.Rmd", package="systemPipeRdata")
evalCode(infile=file, eval=FALSE, output=file.path(tempdir(), "test.Rmd"))
#> [1] "/tmp/Rtmp7ygQ4c/test.Rmd"